Last updated November 2, 2026

Medical Coding Haemophilus influenzae | Coding Clarified

Medical Coding Haemophilus influenzae

Janine Mothershed

ICD-10-CM Coding for Haemophilus influenzae

Here’s a clear and thorough guide for billing and ICD-10-CM coding for Haemophilus influenzae (H. influenzae) — not to be confused with the flu (influenza virus). This bacterium can cause serious invasive diseases like meningitis, epiglottitis, pneumonia, and sepsis.

Common ICD-10 Diagnosis Codes:

ICD-10 Code Description
A41.3 Sepsis due to Haemophilus influenzae
G00.0 Haemophilus influenzae meningitis
J14 Pneumonia due to Haemophilus influenzae
J05.1 Acute epiglottitis
J20.1 Acute bronchitis due to H. influenzae
H66.9- + B96.3 Otitis media, with B96.3 to identify H. influenzae as the cause (there is no single otitis code for this organism)
A49.2 H. influenzae infection, unspecified site

Vaccination Coding for Hib (Haemophilus influenzae type b)

Vaccination is specifically for Hib, primarily in pediatric populations.

CPT Codes – Hib Vaccine:

CPT Code Description
90698 DTaP-IPV/Hib combination vaccine
90697 DTaP-IPV-Hib-HepB combination vaccine
Note Older Hib codes such as 90645 and 90646 are no longer used
90647 Hib vaccine, PRP-OMP conjugate, 3-dose schedule
90648 Hib vaccine, PRP-T conjugate, 4-dose schedule

Vaccine Administration Codes:

Code Description
90460 Vaccine admin with counseling (0–18 years, first vaccine)
90461 Admin for each additional component
90471/90472 Admin codes without counseling (used in adults or no counseling)

Diagnosis Code for Immunization:

  • Z23 – Encounter for immunization

Billing Tips

When treating H. influenzae infection:

  • Use the most specific ICD-10 code (e.g., J14 for pneumonia).

  • Document organism identification (via culture or PCR).

  • If multiple complications are present, code each condition (e.g., meningitis and sepsis).

When billing for Hib vaccine:

  • Use Z23 as the primary diagnosis.

  • Ensure proper documentation of:

    • Manufacturer, lot number

    • Route, site of administration

    • Parent/guardian consent

    • Counseling (if billing 90460/90461)

Clinical and Coding Scenarios

Example 1: Hib Meningitis

  • ICD-10: G00.0

  • Supporting codes: Fever (R50.9), seizures (R56.9) if present

Example 2: Hib Pneumonia

  • ICD-10: J14

  • Avoid generic pneumonia codes unless cause is unknown

Example 3: Well-child visit with Hib vaccine

  • CPT: 90648

  • Admin: 90460 (if counseling given)

  • ICD-10: Z23 + Z00.129 (routine child visit)

Compliance & Documentation Tips

  • Use lab confirmation if billing for a specific organism (especially G00.0 or A41.3).

  • Avoid generic infection codes when a specific bacterial etiology is documented.

  • When giving the Hib vaccine:

    • Include documentation of education/counseling if using 90460

    • Include Z23 in diagnosis

  • Check payer-specific policies: Some Medicaid/CHIP plans have unique guidelines for vaccine billing

Summary Coding Table

Condition ICD-10 Code CPT Code (if vaccinated)
Hib Meningitis G00.0 —
Hib Pneumonia J14 —
Hib Sepsis A41.3 —
Hib Otitis Media H66.9- + B96.3 —
Hib Vaccine Z23 90647 or 90648 (or a combination vaccine) + admin

CDC Haemophilus influenzae surveillance

Frequently Asked Questions About H. influenzae Coding

What is the ICD-10 code for H. influenzae pneumonia?

J14, Pneumonia due to Hemophilus influenzae.

How do I code H. influenzae as the cause of another infection?

When there is no combination code for the condition, code the condition first and add B96.3, Hemophilus influenzae as the cause of diseases classified elsewhere.

What is the code for acute bronchitis due to H. influenzae?

J20.1, Acute bronchitis due to Hemophilus influenzae.

Which administration code goes with a Hib vaccine for a child?

Use 90460 (and 90461 for each additional component) when the provider counsels a patient through age 18; otherwise use 90471 and 90472.

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