February 26, 2025
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Primary vs Secondary Diagnosis in Medical Coding

By Janine Mothershed

Guidelines and Tips for Medical Coding and Billing: Primary vs. Secondary Diagnoses

The distinction between primary vs secondary diagnoses in medical coding and billing plays a vital role in determining the correct codes and ensuring accurate reimbursement. The primary diagnosis is the main reason a patient seeks medical care, while secondary diagnoses refer to additional conditions that are present but are not the primary reason for the visit or admission.

This blog explores the guidelines and best practices for differentiating between primary and secondary diagnoses, as well as tips for accurate coding and billing practices.

Understanding Primary vs. Secondary Diagnoses

Primary Diagnosis

  • The primary diagnosis is the condition that is chiefly responsible for the patient’s reason for the encounter or hospitalization.
  • This condition is the main reason the patient seeks medical attention, whether for diagnosis, treatment, or management.
  • In the context of inpatient admissions, the primary diagnosis is the reason the patient is admitted to the hospital. For outpatient visits, it’s the condition that brought the patient to the healthcare provider.

Examples of primary diagnoses:

A patient admitted for acute myocardial infarction (heart attack) (ICD-10 code: I21.9).

A patient visiting for routine prenatal care (ICD-10 code: Z34.90).

A patient visiting for severe pneumonia (ICD-10 code: J18.9).

Secondary Diagnosis

  • A secondary diagnosis refers to any condition that coexists with the primary diagnosis but is not the primary reason for the patient’s visit or admission.
  • Secondary diagnoses may affect the treatment or outcome of the primary condition, but they are not the primary focus of care during the encounter.
  • These conditions may be chronic diseases, comorbidities, complications, or other medical issues that contribute to the patient’s overall health status.

Examples of secondary diagnoses:

    • A patient with diabetes (ICD-10 code: E11.9) being treated for a fracture (ICD-10 code: S52.5) after a fall.
    • A patient with hypertension (ICD-10 code: I10) hospitalized for acute stroke (ICD-10 code: I63.9).
    • A patient with obesity (ICD-10 code: E66.9) and osteoarthritis (ICD-10 code: M19.90) visiting for routine care.

Key Guidelines for Determining Primary vs. Secondary Diagnoses

Follow Clinical Documentation

The primary diagnosis should be clinically documented as the main reason for the encounter or hospitalization. Coders rely on the physician’s notes, admission records, and discharge summaries to determine which condition is primary.

If a patient is admitted for surgery due to an injury but also has diabetes, the injury is the primary diagnosis, while diabetes is secondary because it affects the patient’s recovery or treatment but was not the reason for the admission.

Look for the Condition Requiring the Most Resources

A primary diagnosis often requires more intensive care or treatment resources. For example, a heart attack would require significantly more medical intervention than a chronic condition like hypertension or diabetes.

If a patient has multiple conditions that require treatment during the same visit or admission, the diagnosis that warrants the majority of the medical care should be coded as primary.

Sequencing of Diagnoses

In ICD-10-CM, when coding multiple diagnoses, the primary diagnosis should always come first. Secondary diagnoses follow in order of significance, complexity, or how they impact the patient’s care.

Example: In a situation where a patient has pneumonia (primary diagnosis) and chronic obstructive pulmonary disease (COPD) (secondary diagnosis), pneumonia should be listed first as it is the condition being treated in the encounter.

Sequencing https://codingclarified.com/medical-coding-sequencing/

Acute vs. Chronic Conditions

Acute conditions typically take precedence as the primary diagnosis during an encounter, even if the patient also has chronic conditions. For example, a patient with chronic heart failure (secondary diagnosis) might be admitted for acute heart failure (primary diagnosis).

Chronic conditions like diabetes or hypertension may be secondary unless they are actively being managed or treated during the encounter.

Chronic https://codingclarified.com/medical-coding-for-chronic-conditions/

Comorbidities and Complications

A comorbidity (a pre-existing condition) or a complication (a condition that arises during treatment) may be a secondary diagnosis. For example, if a patient has diabetes and is admitted for foot ulcers, the foot ulcers would be the primary diagnosis, while diabetes would be secondary.

If a patient develops complications, such as sepsis due to surgery, sepsis should be coded as the primary diagnosis, and the underlying condition (e.g., surgical wound infection) would be secondary.

Co-existing https://codingclarified.com/medical-coding-co-existing-conditions/

Tips for Accurate Coding and Billing for Primary and Secondary Diagnoses

Ensure Accurate Documentation

Thorough documentation by the healthcare provider is key to assigning the correct primary and secondary diagnoses. Physicians should document the primary reason for the visit or admission and note any other conditions affecting the patient’s health.

Coders should be familiar with clinical terminology and understand how each diagnosis impacts the patient’s treatment to avoid misclassification.

Use ICD-10-CM Codes Effectively

ICD-10-CM codes are more specific than previous versions (e.g., ICD-9-CM), so coders should utilize the most accurate and specific code available.

For secondary diagnoses, ensure that the condition is documented clearly and that it’s evident how it affects the patient’s care. For example, if a patient with asthma is treated for acute respiratory distress, asthma should be documented as a secondary condition.

Review Guidelines for Hierarchical Conditions

Some conditions are classified as hierarchical, meaning the secondary diagnosis might have a larger impact on treatment. For example, diabetes with complications will often be classified as a more significant diagnosis than hypertension without complications. Review clinical guidelines to ensure correct sequencing.

Understand Payer Policies

Different insurers may have varying guidelines regarding the use of primary and secondary diagnoses. Some payers may prioritize certain conditions over others when determining reimbursement.

For example, Medicare Advantage plans use Hierarchical Condition Categories (HCC) to assess risk scores, and the accurate reporting of comorbidities can significantly impact reimbursement.

Follow Coding Conventions

Follow coding conventions that dictate when a diagnosis should be considered primary. For example, the ICD-10-CM includes guidelines on how to code multiple diagnoses when they are related to specific body systems (e.g., coding for diabetes with nephropathy).

Pay close attention to combination codes that may account for both primary and secondary diagnoses in one code (e.g., E11.22 for type 2 diabetes with diabetic nephropathy).

Avoid Overcoding or Undercoding

While secondary diagnoses can influence the treatment plan, avoid overcoding by reporting conditions that do not impact the current visit or treatment. On the flip side, undercoding can lead to under-reimbursement and inaccuracies in medical records.

Ensure that only conditions that actively impact patient care are coded, and avoid listing historical conditions or conditions that have resolved unless they’re actively influencing care.

Bundling and Upcoding https://codingclarified.com/medical-coding-bundling-and-upcoding-guidelines/

Properly differentiating between primary and secondary diagnoses is critical for accurate coding, compliance, and reimbursement. Accurate documentation by healthcare providers and precise coding by medical coders are essential to ensure that each diagnosis is captured appropriately. By understanding the guidelines for determining primary versus secondary diagnoses, coders can prevent claim denials, optimize reimbursement, and reflect the true complexity of patient care.

Following these guidelines and tips will help improve the accuracy and efficiency of the coding and billing process, leading to better outcomes for healthcare providers, patients, and payers alike.

Q&A: Primary, principal, and secondary diagnoses

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