June 4, 2025

Medical Coding Haemophilus influenzae

By Janine Mothershed

ICD-10-CM Coding for Haemophilus influenzae

Here’s a clear and thorough guide for medical coding and billing for Haemophilus influenzae (H. influenzae) — not to be confused with the flu (influenza virus). This bacterium can cause serious invasive diseases like meningitis, epiglottitis, pneumonia, and sepsis.

Common ICD-10 Diagnosis Codes:

ICD-10 CodeDescription
A41.3Sepsis due to Haemophilus influenzae
G00.0Haemophilus influenzae meningitis
J14Pneumonia due to Haemophilus influenzae
J05.1Acute epiglottitis
J20.3Acute bronchitis due to H. influenzae
H66.3Otitis media due to H. influenzae
A49.2H. influenzae infection, unspecified site

Vaccination Coding for Hib (Haemophilus influenzae type b)

Vaccination is specifically for Hib, primarily in pediatric populations.

CPT Codes – Hib Vaccine:

CPT CodeDescription
90644Hib-Hep B vaccine (combined)
90645Hib vaccine, PRP-D conjugate
90646Hib vaccine, PRP-OMP conjugate
90647Hib vaccine, PRP-T conjugate
90648Hib vaccine, PRP-T conjugate (different brand)

Vaccine Administration Codes:

CodeDescription
90460Vaccine admin with counseling (0–18 years, first vaccine)
90461Admin for each additional component
90471/90472Admin codes without counseling (used in adults or no counseling)

Diagnosis Code for Immunization:

  • Z23 – Encounter for immunization

Billing Tips

When treating H. influenzae infection:

  • Use the most specific ICD-10 code (e.g., J14 for pneumonia).

  • Document organism identification (via culture or PCR).

  • If multiple complications are present, code each condition (e.g., meningitis and sepsis).

When billing for Hib vaccine:

  • Use Z23 as the primary diagnosis.

  • Ensure proper documentation of:

    • Manufacturer, lot number

    • Route, site of administration

    • Parent/guardian consent

    • Counseling (if billing 90460/90461)

Clinical and Coding Scenarios

Example 1: Hib Meningitis

  • ICD-10: G00.0

  • Supporting codes: Fever (R50.9), seizures (R56.9) if present

Example 2: Hib Pneumonia

  • ICD-10: J14

  • Avoid generic pneumonia codes unless cause is unknown

Example 3: Well-child visit with Hib vaccine

  • CPT: 90648

  • Admin: 90460 (if counseling given)

  • ICD-10: Z23 + Z00.129 (routine child visit)

Compliance & Documentation Tips

  • Use lab confirmation if billing for a specific organism (especially G00.0 or A41.3).

  • Avoid generic infection codes when a specific bacterial etiology is documented.

  • When giving the Hib vaccine:

    • Include documentation of education/counseling if using 90460

    • Include Z23 in diagnosis

  • Check payer-specific policies: Some Medicaid/CHIP plans have unique guidelines for vaccine billing

Summary Coding Table

ConditionICD-10 CodeCPT Code (if vaccinated)
Hib MeningitisG00.0
Hib PneumoniaJ14
Hib SepsisA41.3
Hib Otitis MediaH66.3
Hib VaccineZ2390645–90648 + admin

https://www.cdc.gov/hi-disease/php/surveillance/index.html#:~:text=National%20Notifiable%20Diseases%20Surveillance%20System,Diseases%20Surveillance%20System%20(NNDSS).

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